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1

Concepts and tools for NMR restraint analysis and validation

Sander B. Nabuurs, Chris A.E.M. Spronk, Gert Vriend, Geerten W. Vuister

Journal:

Concepts in Magnetic Resonance Part A

Year:

2004

Language:

english

File:

PDF, 539 KB

english, 2004

2

NMRPipe: A multidimensional spectral processing system based on UNIX pipes

Frank Delaglio, Stephan Grzesiek, Geerten W. Vuister, Guang Zhu, John Pfeifer, Ad Bax

Journal:

Journal of Biomolecular NMR

Year:

1995

Language:

english

File:

PDF, 3.57 MB

english, 1995

3

Determination of Amide Proton CSA in15N-Labeled Proteins Using1H CSA/15N–1H Dipolar and15N CSA/15N–1H Dipolar Cross-Correlation Rates

Marco Tessari, Frans A.A Mulder, Rolf Boelens, Geerten W Vuister

Journal:

Journal of Magnetic Resonance

Year:

1997

Language:

english

File:

PDF, 156 KB

english, 1997

4

NMR Experiments for the Study of Photointermediates: Application to the Photoactive Yellow Protein

Gilles Rubinstenn, Geerten W. Vuister, Nico Zwanenburg, Klaas J. Hellingwerf, Rolf Boelens, Robert Kaptein

Journal:

Journal of Magnetic Resonance

Year:

1999

Language:

english

File:

PDF, 74 KB

english, 1999

5

A Two-Dimensional Artifact from Asynchronous Decoupling

Hugo van Ingen, Geerten W. Vuister, Marco Tessari

Journal:

Journal of Magnetic Resonance

Year:

2002

Language:

english

File:

PDF, 101 KB

english, 2002

6

Resolution enhancement and spectral editing of uniformly 13C-enriched proteins by homonuclear broadband 13C decoupling

Geerten W Vuister, Ad Bax

Journal:

Journal of Magnetic Resonance (1969)

Year:

1969

Language:

english

File:

PDF, 606 KB

english, 1969

7

Gradient-enhanced heteronuclear correlation spectroscopy. Theory and experimental aspects

Jesus Ruiz-Cabello, Geerten W Vuister, Chrit T.W Moonen, Peter van Gelderen, Jack S Cohen, Peter C.M van Zijl

Journal:

Journal of Magnetic Resonance (1969)

Year:

1969

Language:

english

File:

PDF, 1.21 MB

english, 1969

8

Gradient-enhanced multiple-quantum filter (ge-MQF). A simple way to obtain single-scan phase-sensitive HMQC spectra

Geerten W Vuister, Jesús Ruff-Cabello, Peter C.M van Zijl

Journal:

Journal of Magnetic Resonance (1969)

Year:

1969

Language:

english

File:

PDF, 396 KB

english, 1969

9

Flexibility of the calmodulin central helix is key to its function.

Mitsuhiko Ikura, Stephan Grzesiek, Geerten Vuister, Claude B. Klee, Ad Bax

Journal:

Journal of Inorganic Biochemistry

Year:

1993

Language:

english

File:

PDF, 82 KB

english, 1993

10

Validation of protein structures derived by NMR spectroscopy

Chris A.E.M. Spronk, Sander B. Nabuurs, Elmar Krieger, Gert Vriend, Geerten W. Vuister

Journal:

Progress in Nuclear Magnetic Resonance Spectroscopy

Year:

2004

Language:

english

File:

PDF, 1023 KB

english, 2004

11

DRESS: a database of REfined solution NMR structures

Sander B. Nabuurs, Aart J. Nederveen, Wim Vranken, Jurgen F. Doreleijers, Alexandre M.J.J. Bonvin, Geerten W. Vuister, Gert Vriend, Christian A.E.M. Spronk

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 202 KB

english, 2004

12

Binding of calcium is sensed structurally and dynamically throughout the second calcium-binding domain of the sodium/calcium exchanger

Vincent Breukels, Geerten W. Vuister

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.69 MB

english, 2010

13

Measurement of four-bond HN-HαJ-couplings in staphylococcal nuclease

Geerten W. Vuister, Ad Bax

Journal:

Journal of Biomolecular NMR

Year:

1994

Language:

english

File:

PDF, 512 KB

english, 1994

14

A simple and sensitive experiment for measurement of JCCcouplings between backbone carbonyl and methyl carbons in isotopically enriched proteins

Stephan Grzesiek, Geerten W. Vuister, Ad Bax

Journal:

Journal of Biomolecular NMR

Year:

1993

Language:

english

File:

PDF, 409 KB

english, 1993

15

Measurement of two- and three-bond13C−1H J couplings to the Cδcarbons of leucine residues in staphylococcal nuclease

Geerten W. Vuister, Toshimasa Yamazaki, Dennis A. Torchia, Ad Bax

Journal:

Journal of Biomolecular NMR

Year:

1993

Language:

english

File:

PDF, 660 KB

english, 1993

16

The use of1JCαHαcoupling constants as a probe for protein backbone conformation

Geerten W. Vuister, Frank Delaglio, Ad Bax

Journal:

Journal of Biomolecular NMR

Year:

1993

Language:

english

File:

PDF, 838 KB

english, 1993

17

Resonance assignment of methionine methyl groups and χ3angular information from long-range proton—carbon and carbon—carbon J correlation in a calmodulin—peptide complex

Ad Bax, Frank Delaglio, Stephan Grzesiek, Geerten W. Vuister

Journal:

Journal of Biomolecular NMR

Year:

1994

Language:

english

File:

PDF, 794 KB

english, 1994

18

Measurement of two-bond JCOHαcoupling constants in proteins uniformly enriched with13C

Geerten W. Vuister, Ad Bax

Journal:

Journal of Biomolecular NMR

Year:

1992

Language:

english

File:

PDF, 317 KB

english, 1992

19

Gradient-enhanced 3D NOESY-HMQC spectroscopy

Geerten W. Vuister, Rolf Boelens, Robert Kaptein, Maurits Burgering, Peter C. M. van Zijl

Journal:

Journal of Biomolecular NMR

Year:

1992

Language:

english

File:

PDF, 296 KB

english, 1992

20

Statistical analysis of double NOE transfer pathways in proteins as measured in 3D NOE-NOE spectroscopy

Geerten W. Vuister, Rolf Boelens, André Padilla, Robert Kaptein

Journal:

Journal of Biomolecular NMR

Year:

1991

Language:

english

File:

PDF, 997 KB

english, 1991

21

Definition of a New Information-Based Per-Residue Quality Parameter

Sander B. Nabuurs, Elmar Krieger, Chris A. E. M. Spronk, Aart J. Nederveen, Gert Vriend, Geerten W. Vuister

Journal:

Journal of Biomolecular NMR

Year:

2005

Language:

english

File:

PDF, 595 KB

english, 2005

22

Solution Structure of the Second PDZ Domain of the Neuronal Adaptor X11α and its Interaction with the C-terminal Peptide of the Human Copper Chaperone for Superoxide Dismutase

Aude E. Duquesne, Martina de Ruijter, Jaap Brouwer, Jan W. Drijfhout, Sander B. Nabuurs, Chris A. E. M. Spronk, Geerten W. Vuister, Marcellus Ubbink, Gerard W. Canters

Journal:

Journal of Biomolecular NMR

Year:

2005

Language:

english

File:

PDF, 425 KB

english, 2005

23

The NMR restraints grid at BMRB for 5,266 protein and nucleic acid PDB entries

Jurgen F. Doreleijers, Wim F. Vranken, Christopher Schulte, Jundong Lin, Jonathan R. Wedell, Christopher J. Penkett, Geerten W. Vuister, Gert Vriend, John L. Markley, Eldon L. Ulrich

Journal:

Journal of Biomolecular NMR

Year:

2009

Language:

english

File:

PDF, 341 KB

english, 2009

24

The interaction of PTP-BL PDZ domains with RIL: An enigmatic role for the RIL LIM domain

Lieke C. J. van den Berk, Marco A. van Ham, Mariska M. te Lindert, Tine Walma, Jan Aelen, Geerten W. Vuister, Wiljan J. A. J. Hendriks

Journal:

Molecular Biology Reports

Year:

2005

Language:

english

File:

PDF, 560 KB

english, 2005

25

Gradient-enhanced exchange spectroscopy

Chrit T.W Moonen, Peter Van Gelderen, Geerten W Vuister, Peter C.M Van Zijl

Journal:

Journal of Magnetic Resonance (1969)

Year:

1969

Language:

english

File:

PDF, 440 KB

english, 1969

26

Overlapping transport and chaperone-binding functions within a bacterial twin-arginine signal peptide

Sabine Grahl, Julien Maillard, Chris A. E. M. Spronk, Geerten W. Vuister, Frank Sargent

Journal:

Molecular Microbiology

Year:

2012

Language:

english

File:

PDF, 1.09 MB

english, 2012

27

10.1038/81944

Vuister, Geerten W., Spronk, Christian A. E. M., Tessari, Marco, Kaan, Anita M., Jansen, Jacobus F. A., Vermeulen, Michiel, Stunnenberg, Hendrik G.

Journal:

Natural Structural Biology

Year:

2000

Language:

english

File:

PDF, 759 KB

english, 2000

28

Structural and dynamic changes of photoactive yellow protein during its photocycle in solution

Rubinstenn, Gilles, Vuister, Geerten W., Mulder, Frans A. A., Düx, Petra E., Boelens, Rolf, Hellingwerf, Klaas J., Kaptein, Robert

Journal:

Natural Structural Biology

Year:

1998

Language:

english

File:

PDF, 132 KB

english, 1998

29

Solution structure of the DNA-binding domain of Drosophila heat shock transcription factor

Vuister, Geerten W., Kim, Soon-Jong, Orosz, András, Marquardt, John, Wu, Carl, Bax, Ad

Journal:

Natural Structural Biology

Year:

1994

File:

PDF, 1.21 MB

1994

30

ATP-induced conformational changes of the nucleotide-binding domain of Na,K-ATPase

Hilge, Mark, Siegal, Gregg, Vuister, Geerten W, Güntert, Peter, Gloor, Sergio M, Abrahams, Jan Pieter

Journal:

Natural Structural Biology

Year:

2003

Language:

english

File:

PDF, 1.51 MB

english, 2003

31

Structural Basis for Ca2+ Regulation in the Na+/Ca2+ Exchanger

MARK HILGE, JAN AELEN, ANASTASSIS PERRAKIS, GEERTEN W. VUISTER

Journal:

Annals of the New York Academy of Sciences

Year:

2007

Language:

english

File:

PDF, 213 KB

english, 2007

32

Resonance assignment and secondary structure of the cold shock domain of the human YB-1 protein

Cathelijne P. A. M. Kloks, Astrid Hoffmann, James G. Omichinski, Geerten W. Vuister, Cornelis W. Hilbers, Stephan Grzesiek

Journal:

Journal of Biomolecular NMR

Year:

1998

Language:

english

File:

PDF, 30 KB

english, 1998

33

A novel experiment for the quantitative measurement of CSA(1HN)/CSA(15N) cross-correlated relaxation in 15N-labeled proteins*

Marco Tessari, Geerten W. Vuister

Journal:

Journal of Biomolecular NMR

Year:

2000

Language:

english

File:

PDF, 65 KB

english, 2000

34

Letter to the Editor: Sequence-specific1H,13C and15N assignment of the single-stranded DNA binding protein of the bacteriophage φ29

Antonio Pineda-Lucena, Geerten W. Vuister, Cornelis W. Hilbers

Journal:

Journal of Biomolecular NMR

Year:

1999

Language:

english

File:

PDF, 38 KB

english, 1999

35

Sequence-specific1H,13C and15N assignment of the EH1 domain of mouse Eps15

Brian Whitehead, Marco Tessari, Henri H. Versteeg, Sanne van Delft, Paul M. P. van Bergen en Henegouwen, Geerten W. Vuister

Journal:

Journal of Biomolecular NMR

Year:

1998

Language:

english

File:

PDF, 35 KB

english, 1998

36

Letter to the Editor: Sequence-specific 1H, 13C and 15N assignment and secondary structure of the apo EH2 domain of mouse Eps15

Alfonso Carotenuto, Marco Tessari, Brian Whitehead, Jan M.A. Aelen, Paul M.P. van Bergen en Henegouwen, Geerten W. Vuister

Journal:

Journal of Biomolecular NMR

Year:

1999

Language:

english

File:

PDF, 36 KB

english, 1999

37

Letter to the Editor: Sequence-specific assignment of the PAH2 domain of Sin3B free and bound to Mad1

Christian A. E. M. Spronk, Jacobus F. A. Jansen, Marco Tessari, Anita M. Kaan, Jan Aelen, Edwin Lasonder, Hendrik G. Stunnenberg, Geerten W. Vuister

Journal:

Journal of Biomolecular NMR

Year:

2001

Language:

english

File:

PDF, 41 KB

english, 2001

38

Improving the quality of protein structures derived by NMR spectroscopy**

Christian A.E.M. Spronk, Jens P. Linge, Cornelis W. Hilbers, Geerten W. Vuister

Journal:

Journal of Biomolecular NMR

Year:

2002

Language:

english

File:

PDF, 97 KB

english, 2002

39

Measurement of15N-1H coupling constants in uniformly15N-labeled proteins: Application to the photoactive yellow protein

Petra Düx, Brian Whitehead, Rolf Boelens, Robert Kaptein, Geerten W. Vuister

Journal:

Journal of Biomolecular NMR

Year:

1997

Language:

english

File:

PDF, 154 KB

english, 1997

40

A 15n-filtered 2D 1H TOCSY experiment for assignment of aromatic ring resonances and selective identification of tyrosine ring resonances in proteins: Description and application to Photoactive Yellow Protein

Brian Whitehead, Marco Tessari, Petra Düx, Rolf Boelens, Robert Kaptein, Geerten W. Vuister

Journal:

Journal of Biomolecular NMR

Year:

1997

Language:

english

File:

PDF, 146 KB

english, 1997

41

A 3D doubly sensitivity enhanced X-filtered TOCSY-TOCSY experiment

Hugo van Ingen, Marco Tessari, Geerten W. Vuister

Journal:

Journal of Biomolecular NMR

Year:

2002

Language:

english

File:

PDF, 122 KB

english, 2002

42

The precision of NMR structure ensembles revisited

Chris A.E.M. Spronk, Sander B. Nabuurs, Alexandre M.J.J. Bonvin, Elmar Krieger, Geerten W. Vuister, Gert Vriend

Journal:

Journal of Biomolecular NMR

Year:

2003

Language:

english

File:

PDF, 209 KB

english, 2003

43

Solution Structure and Backbone Dynamics of the Photoactive Yellow Protein†,‡

Düx, Petra, Rubinstenn, Gilles, Vuister, Geerten W., Boelens, Rolf, Mulder, Frans A. A., Hård, Karl, Hoff, Wouter D., Kroon, Arthur R., Crielaard, Wim, Hellingwerf, Klaas J.

Journal:

Year:

1998

Language:

english

File:

PDF, 332 KB

english, 1998

44

The TRPV5/6 calcium channels contain multiple calmodulin binding sites with differential binding properties

Nadezda V. Kovalevskaya, Fedir M. Bokhovchuk, Geerten W. Vuister

Journal:

Journal of Structural and Functional Genomics

Year:

2012

Language:

english

File:

PDF, 4.46 MB

english, 2012

45

Gradient-enhanced heteronuclear correlation spectroscopy: Theory and experimental aspects

Jesús Ruiz-Cabello, Geerten W. Vuister, Chrit T.W. Moonen, Peter van Gelderen, Jack S. Cohen, Peter C.M. van Zijl

Journal:

Journal of Magnetic Resonance

Year:

2011

Language:

english

File:

PDF, 2.94 MB

english, 2011

46

A Closed Binding Pocket and Global Destabilization Modify the Binding Properties of an Alternatively Spliced Form of the Second PDZ Domain of PTP-BL

Tine Walma, Jan Aelen, Sander B Nabuurs, Marlies Oostendorp, Lieke van den Berk, Wiljan Hendriks, Geerten W Vuister

Journal:

Year:

2004

Language:

english

File:

PDF, 517 KB

english, 2004

47

Demonstration of Long-Range Interactions in a PDZ Domain by NMR, Kinetics, and Protein Engineering

Stefano Gianni, Tine Walma, Alessandro Arcovito, Nicoletta Calosci, Andrea Bellelli, Åke Engström, Carlo Travaglini-Allocatelli, Maurizio Brunori, Per Jemth, Geerten W. Vuister

Journal:

Year:

2006

Language:

english

File:

PDF, 913 KB

english, 2006

48

The solution structure and DNA-binding properties of the cold-shock domain of the human Y-box protein YB-1

Cathelijne P.A.M. Kloks, Christian A.E.M. Spronk, Edwin Lasonder, Astrid Hoffmann, Geerten W. Vuister, Stephan Grzesiek, Cornelis W. Hilbers

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 555 KB

english, 2002

49

Structure, dynamics and binding characteristics of the second PDZ domain of PTP-BL

Tine Walma, Christian A.E.M Spronk, Marco Tessari, Jan Aelen, Jan Schepens, Wiljan Hendriks, Geerten W Vuister

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 467 KB

english, 2002

50

Proton NMR resonance assignments and surface accessibility of tryptophan residues of a dimeric phospholipase A2 from Trimeresurus flavoviridis

Toshiya Endo, Masanao Oya, Robert Kaptein, Geerten W. Vuister, Hiroshi Kihara, Noriko Mohri, Shuji Tanaka, Motonori Ohno

Journal:

Year:

1988

Language:

english

File:

PDF, 283 KB

english, 1988